PUBLICATIONS
"Theory is when you know everything, but nothing works.
Practice is when everything works, but no one knows why.
In our lab, theory and practice are combined:
nothing works and no one knows why."
Video abstracts of recent papers in the Takatori lab (2023)
Activity-driven lipid bilayer separation into liquid ordered and disordered phases. Time-lapse images of driven actin filaments on the bilayer (magenta, top). Liquid ordered domains growing in time, left to right (green, bottom).
Arnold DP (co-first), Gubbala A (co-first), Takatori SC.
Active surface flows accelerate the coarsening of lipid membrane domains. Phys Rev Lett. 2023; 131, 128402. [Link]
Xu Y (co-first), Choi KH (co-first), Nagella SG, Takatori SC. Dynamic interfaces for contact-time control of colloidal interactions. Soft Matter, 2023; 19, 5692. [Link]
Submitted:
Gubbala A (co-first), Arnold DP (co-first), Jena A, Anujarerat S, Takatori SC. Dynamic swarms regulate the morphology and distribution of soft membrane domains. [Link] [video abstract]
Takatori SC^, Quah T, Rawlings JB^. Feedback control of active matter. Annual Reviews of Condensed Matter Physics. (^ co-corresponding)
29. Barakat JM*, Modica K*, Lu L, Anujarerat S, Choi KH, Takatori SC. Surface topography induces and orients nematic swarms of active filaments: considerations for lab-on-a-chip devices, ACS Applied Nano Materials, DOI: 10.1021/acsanm.4c02020, 2024. (* equal contribution)
28. Quah T, Takatori SC^, Rawlings JB^. Neural network augmented model predictive control: Application to active Brownian particles. American Control Conference, IEEE (peer-reviewed). 2024. ( ^ co-corresponding ) [video abstract]
27. Modica KJ, Takatori SC. Soft confinement of self-propelled rods: simulation and theory. Soft Matter, 2024, DOI: 10.1039/D3SM01340E [Link] [video abstract]
26. Xu Y, Takatori SC. Nonequilibrium interactions between multi-scale colloids regulate the suspension microstructure and rheology. Soft Matter, 2023, 19, 8531 - 8541. DOI: 10.1039/D3SM00947E [Link] [video abstract]
25. Arnold DP*, Gubbala A*, Takatori SC. Active surface flows accelerate the coarsening of lipid membrane domains. Phys Rev Lett. 2023; 131, 128402. (* equal contribution) [Link] [video abstract]
24. Nagella SG, Takatori SC. Colloidal transport phenomena in dynamic, pulsating porous materials. AIChE Journal. 2023; 69(12):e18215. Invited in AIChE Journal Futures Issue, and highlighted as Feature in Chemical Engineering Progress (CEP). 10.1002/aic.18215. [Link, CEP link] [video abstract]
23. Xu Y*, Choi KH*, Nagella SG, Takatori SC. Dynamic interfaces for contact-time control of colloidal interactions. Soft Matter, 2023, DOI: 10.1039/D3SM00673E. (* equal contribution) [Link] [video abstract]
22. Arnold DP, Takatori SC. Bio-enabled engineering of multifunctional "living" surfaces. ACS Nano, 2023, 17, 11077−11086. [Link]
21. Arnold DP, Xu Y, Takatori SC. Antibody binding reports spatial heterogeneities in cell membrane organization. Nature Commun, 2023, 14: 2884. [Link]
20. Takatori SC*^, Son S*^, Lee D, Fletcher DA^. Engineered molecular sensors for quantifying cell surface crowding. Proc Nat Acad Sci, 2023, 120 (21) e2219778120. (* equal contribution; ^ co-corresponding authors) [Link]
19. Modica KJ, Omar A, Takatori SC. Boundary design regulates the diffusion of active matter in heterogeneous environments. Soft Matter, Soft Matter Emerging Investigators Series, 2023. [Link] [video abstract]
18. Barakat JM, Takatori SC. Enhanced dispersion in an oscillating array of harmonic traps. Phys Rev E. 2023. (co-corresponding authors) [Link]
17. Modica KJ, Xi Y, Takatori SC. Porous media micro-structure determines the diffusion of active matter: experiments and simulations. Frontiers in Physics. 2022. [Link] [video abstract]
16. Takatori SC, Mandadapu K. Motility-induced buckling and glassy
dynamics regulate three-dimensional transitions of bacterial monolayers.
2020. [Link] [video abstract]
15. Son S, Takatori SC, Belardi B, Podolski M, Bakalar M, Fletcher DA.
Molecular height measurement by cell surface optical profilometry (CSOP).
Proc Nat Acad Sci. 2020. [Link]
14. Takatori SC^, Sahu A^. Active contact forces drive non-equilibrium
fluctuations in membrane vesicles. Phys Rev Lett. 2020; 124, 158102.
(^ co-corresponding authors) [Link] [video abstract]
Before 2017 (Caltech)
13. Takatori SC, Brady JF. Inertial effects on the stress generation of active fluids. Phys Rev Fluids. 2017; 2, 094305. [Link, PDF]
12. Takatori SC, Brady JF. Superfluid behavior of active suspensions from diffusive stretching. Phys Rev Lett. 2017; 118, 018003. [Link, PDF]
11. Takatori SC*, De Dier R*, Vermant J, Brady JF. Acoustic trapping of active matter. Nat Commun. 2016; 7:10694. (* equal contribution) [Link, PDF]
10. Takatori SC, Brady JF. Forces, stresses and the (thermo?)dynamics of active matter. Curr Opin Colloid Interface Sci. 2016; 21, 24. [Link, PDF]
9. Takatori SC, Brady JF. A theory for the phase behavior of mixtures of active particles. Soft Matter. 2015; 11, 7920. [Link, PDF]
8. Takatori SC, Brady JF. Towards a thermodynamics of active matter. Phys Rev E. 2015; 91, 032117. [Link, PDF]
7. Takatori SC, Brady JF. Swim stress, motion, and deformation of active matter: effect of an external field. Soft Matter. 2014; 10, 9433-9445. [Link, PDF]
6. Takatori SC, Yan W, Brady JF. Swim pressure: stress generation in active matter. Phys Rev Lett. 2014; 113, 028103. [Link, PDF]
Before 2013 (UC Berkeley)
5. Takatori SC, Lazon de la Jara P, Holden B, Ehrmann K, Ho A, Radke CJ. In-vivo corneal oxygen uptake during soft-contact-lens wear. Invest Ophthalmol Vis Sci. 2013; 54, 3472. [Link, PDF]
4. Takatori SC, Lazon de la Jara P, Holden B, Ehrmann K, Ho A, Radke CJ. Author Response: In Vivo Oxygen Uptake into the Human Cornea. Invest Ophthalmol Vis Sci, 2012; 53: 6829. [Link]
3. Takatori SC, Lazon de la Jara P, Holden B, Ehrmann K, Ho A, Radke CJ. In vivo oxygen uptake into the human cornea. Invest Ophthalmol Vis Sci. 2012; 53, 6331. [Link, PDF]
2. Takatori SC, Radke CJ. A quasi-2-dimensional model for respiration of the cornea with soft contact lens wear. Cornea. 2012; 31, 405. [Link, PDF]
1. Ryan W, Takatori SC, Booze T, Kang H-Y. Toward safe and sustainable nanomaterials: Chemical Information Call-in to manufacturers of nanomaterials by California as a case study. The European Journal of Law and Technology. 2011; 2: 1-11. [Link]
